When I first started to make a little website for myself as a hobby, I made it in Hugo, using the Cupper theme. But I've switched to Dokwiki now, and I feel much more at home.
When I first started using Dokuwiki, i just put random notes there, not intending to really use it for much more than a fun hobby project. But it has now grown to a personal knowledge base with random facts, protocols, and information about techniques. I thought it would be useful for myself to write down what I've learned, and thought I could share it with others as well.
In a previous post, I discussed why you would want to use Obsidian as an electronic lab notebook (ELN). Just to quickly recap: Obsidian is flexible, (pretty) open, and free to use. In this post, I will guide you through the practical steps of setting up Obsidian for effective use as an ELN. First, I will explain broadly how everything sticks together, followed by a more in-depth exploration of the configuration details at the end of the post.
In the beginning there was the physical book. The first half of my PhD, I wrote what I did in that physical notebooks. But, as the world is moving to more transparent science, Electronic Lab Notebooks (ELNs) are becoming the norm. After some struggling in OneNote, I have now settled for Obsidian.
So, you have finished the sciency bits of you PhD degree, that is great. But now, the really awful part starts - actually compressing all of that into a cohesive document, your thesis. In this little post, the actual rewriting I will not discuss, although this is a real challenge1). Instead I will discuss formatting.